package XML;
public class Reader { 
      public Reader()xmlDocument = null;}
    public boolean setUpFile(File xml)
    public String getFilename()
    public GeneralParameters readGeneral()
    public WaTorParameters readCell_WaTor()
    public FireParameters readCell_Fire()
    public SegregationParameters readCell_Segregation()
    public LangstonsLoopsParameters readCell_LangstonsLoops()
    public AntsParameters readCell_Ants()
    public RockPaperScissorsParameters readCell_RockPaperScissors()
}
 
package Simulator.UI;
public class Simulation { 
      public Simulation(String type, int r, int c, double xpos, double ypos, double size, Reader xmlFile)
}
 
package Simulator.UI;
public class GUI { 
      public GUI(Stage stage) throws FileNotFoundException
    public Group getMyRoot() 
}
 
package Simulator;
public class Cell_Segregation extends Cell{ 
      public Cell_Segregation(int row, int col, int totalRows, double totalColumns, double simulationWidth, Reader xml)
    public void calcNextState(List<Cell> possibleNeighbors)
    public double likeNeighborsPercentageOf(List<Cell> possibleNeighbors)
    public void updateEmptyCellsList(List<Cell> allCells)
    public int getRandomIndex(List<Cell> list)
    public void applyNextState()
    public void setNextState(String state)
    public void setState(String state)
    public String getState()
    public String getNextState()
    public List<Cell> getNeighborsToroidal(List<Cell> allCells, int numCols, int numRows)
    public void onClick() 
    public void filterNeighbors(List<Cell> possibleNeighbors) 
    public void filterNeighbors(ArrayList<Cell> possibleNeighbors) 
}
 
package Simulator;
public class Cell_GameOfLife extends Cell{ 
      public Cell_GameOfLife(int row, int col, int numRows, int numCols, double simulationWidth, Reader xml) 
    public int liveNeighborsNumber(List<Cell> possibleNeighbors)
    public void calcNextState(List<Cell> possibleNeighbors) 
    public void applyNextState() 
    public void onClick() 
    public void filterNeighbors(List<Cell> possibleNeighbors) 
    public int getRow()
    public int getCol()
    public void setNextState(String state)
    public void setState(String state)
    public String getState()
    public String getNextState()
}
 
package Simulator;
public class Cell_WaTor extends Cell { 
      public Cell_WaTor(int row, int col, int totalRows, double totalColumns, double simulationWidth, Reader xml)
    public void calcNextState(List<Cell> possibleNeighbors) 
    public void applyNextState() 
    public void onClick()  //the order of toggle here is FISH-SHARK-NONE-FISH....
    public void filterNeighbors(List<Cell> possibleNeighbors) 
}
 
package Simulator;
public class Cell_Fire extends Cell{ 
      public Cell_Fire(int row, int col, int totalRows, double totalColumns, double simulationWidth, Reader xml)
    public void calcNextState(List<Cell> possibleNeighbors) 
    public void setNextState(String state)
    public void applyNextState() 
    public void onClick() //our order of toggle is TREE-BURN-NONE-TREE....
    public void filterNeighbors(List<Cell> possibleNeighbors) 
}
 
package Simulator;
public class Main extends Application { 
      public void start(Stage stage) throws FileNotFoundException 
}
 
package Simulator;
public class Cell_LangstonsLoops extends Cell { 
      public Cell_LangstonsLoops(int row, int col, int totalRows, double totalColumns, double simulationWidth, Reader xml) 
    public void extendAffect(List<Cell> possibleNeighbors)
    public void cornerAffect(List<Cell> possibleNeighbors)
    public void calcNextState(List<Cell> possibleNeighbors) 
    public boolean[] neighborLayouts(List<Cell> possibleNeighbors)
    public void move(List<Cell> possibleNeighbors, boolean[] neighborLocations)
    public void moveToNeighbor(List<Cell> possibleNeighbors, int col, int row, String newState)
    public void setNeighbor(List<Cell> possibleNeighbors, int col, int row, String State)
    public void applyNextState() 
    public void onClick() 
    public void filterNeighbors(List<Cell> possibleNeighbors) 
    public void setNextState(String state)
    public void setState(String state)
    public String getState()
    public String getNextState()
}
 
package Simulator;
public abstract class Cell { 
      public Cell(int row, int col, double dimension, Reader xml)
    public void setState(String state)myState = state;}
    public void setNextState(String state)myNextState = state;}
    public String getState()return myState;}
    public String getNextState()return myNextState;}
    public abstract void calcNextState(List<Cell> possibleNeighbors); //pass in the 8 cells around cell
    public abstract void applyNextState(); //update the current stat
    public abstract void onClick(); //toggles state when clicked
    public abstract void filterNeighbors(List<Cell> possibleNeighbors);
    public Polygon getImage()return image;}
    public void setColor(Paint color)
    public List<Cell> getNeighborsToroidal(List<Cell> allCells, int numCols, int numRows)
    public List<Cell> getNeighborsFinite(List<Cell> allCells, int numCols, int numRows)
    public int getRow()return row;}
    public int getCol() return col;}
}
 
package Simulator;
public class Cell_Ants extends Cell{ 
      public Cell_Ants(int row, int col, int totalRows, double totalColumns, double simulationWidth, Reader xml)
    public void colorShape()
    public void fillFood(List<Cell> possibleNeighbors)
    public void decayPheromones()
    public void calcNextState(List<Cell> possibleNeighbors)
    public Cell_Ants homePheromoneOrientation(List<Cell> possibleNeighbors)
    public Cell_Ants foodPheromoneOrientation(List<Cell> possibleNeighbors)
    public int[] goToOrientation(List<Cell> possibleNeighbors,Cell_Ants orientation)
    public void returnToNest(List<Cell> possibleNeighbors)
    public void findFoodSource(List<Cell> possibleNeighbors)
    public Cell_Ants moveToNeighbor(List<Cell> possibleNeighbors, int col, int row, String newState)
    public void dropHomePheromones()
    public void dropFoodPheromones()
    public Cell getRandomNeighbor(List<Cell> possibleNeighbors)
    public int getRandomIndex(List<Cell> list)
    public void applyNextState()
    public void setNextState(String state)
    public void setState(String state)
    public String getState()
    public String getNextState()
    public List<Cell> getNeighbors(Cell[][] allCells)
    public void onClick() 
    public void filterNeighbors(List<Cell> possibleNeighbors) 
}
 
package Simulator;
public class Cell_RockPaperScissors extends Cell{ 
      public Cell_RockPaperScissors(int row, int col, int totalRows, double totalColumns, double simulationWidth, Reader xml)
    public void calcNextState(List<Cell> possibleNeighbors)
    public void colorShape()
    public HashMap<String, Integer> countNeighbors(List<Cell> possibleNeighbors)
    public int similarNeighborsNumber(List<Cell> possibleNeighbors)
    public String maxNeighbor(HashMap<String, Integer> map)
    public Cell getRandomNeighbor(List<Cell> possibleNeighbors)
    public int getRandomIndex(List<Cell> list)
    public void applyNextState()
    public void setNextState(String state)
    public void setState(String state)
    public String getState()
    public String getNextState()
    public void onClick() 
    public void filterNeighbors(List<Cell> possibleNeighbors) 
}
 
package Parameters;
public class AntsParameters { 
          public AntsParameters(String val)
        public int getHiveDiameter()
    public HashMap<String, String> getParameters() 
}
 
package Parameters;
public class RockPaperScissorsParameters { 
      public RockPaperScissorsParameters(String val)
    public int getPower()
    public HashMap<String, String> getParameters() 
}
 
package Parameters;
public class SegregationParameters { 
      public SegregationParameters(String val)
    public HashMap<String, String> getParameters() 
    public double getTolerance() 
}
 
package Parameters;
public class FireParameters { 
      public FireParameters(String burn, String probCatch)
    public int burnDuration()return burnDuration;}
    public double probCatch()return probCatch;}
    public HashMap<String, String> getParameters() 
}
 
package Parameters;
public class GameOfLifeParameters { 
      public HashMap<String, String> getParameters() 
}
 
package Parameters;
public class WaTorParameters { 
      public WaTorParameters(String fertility, String energy, String fish, String shark)
    public int getFertilityLimit() 
    public int getEnergyLimit() 
    public double getPercentFish() 
    public double getPercentShark() 
    public HashMap<String, String> getParameters() 
}
 
package Parameters;
public class LangstonsLoopsParameters { 
      public LangstonsLoopsParameters(String val)
    public HashMap<String, String> getParameters() 
    public int getNumExtenders()
}
 
package Parameters;
public class GeneralParameters { 
      public GeneralParameters(String r, String c, String t, String n, String a, String d, String ne, String stroke, String shape)
    public String getShape()return shape;}
    public Boolean getStroke() return strokeOn;}
    public String getNeighborType()return neighborType;}
    public String getDescription()return description;}
    public String getName() 
    public String getAuthor() 
    public int getRow()return row;}
    public int getCol() return col;}
    public String getType() return type;}
}